Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs4235742 chr5:148509324 C/T 9.9E-5 101 12.58 15.33 15.13 KM Plot
SKCM rs4245972 chr5:578572 A/G 0 99 15.02 13.4 6.33 KM Plot
SKCM rs4419935 chr8:143447132 C/T 7.21E-5 100 15.38 15.57 10.87 KM Plot
SKCM rs4421637 chr1:96350419 C/T 3.5E-5 100 9 11.17 15.55 KM Plot
SKCM rs4527146 chr5:555236 A/G 0 100 15.47 13.35 6.33 KM Plot
SKCM rs4541174 chr19:56164716 C/T 4.48E-6 98 14.05 21.33 9 KM Plot
SKCM rs474707 chr11:64544135 C/T 6.62E-7 100 14.73 15.73 8.8 KM Plot
SKCM rs477549 chr11:64527080 T/C 7.76E-7 99 14.67 15.73 8.8 KM Plot
SKCM rs4775971 chr15:52055933 A/C 3.08E-5 101 9 13.07 14.9 KM Plot
SKCM rs477895 chr11:64048912 C/T 1.76E-10 99 6.83 17.62 14.85 KM Plot
SKCM rs4801749 chr19:48667291 A/C 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs483962 chr11:64527751 A/G 5.48E-7 101 14.73 15.68 8.8 KM Plot
SKCM rs4869955 chr6:151255774 T/C 7.1E-6 98 15.47 10.82 28.43 KM Plot
SKCM rs487105 chr11:64546891 G/A 6.62E-7 100 14.73 15.73 8.8 KM Plot
SKCM rs4893886 chr2:180822890 G/T 2.92E-5 101 9 13.72 15.3 KM Plot